In 2025, countless manufacturing organizations are seeking to expand their operations and hire more employees than ever. As such, they require the best payroll solutions capable of managing both domestic and global workforces, while ensuring compliance. 

Modern payroll software is tailored specifically for manufacturing needs, catering to the specific requirements of companies. In order to provide comprehensive and competitive payroll for manufacturers in this cut-throat economy, payroll software needs to deal with complications like;

  • Multi-country operations
  • Automated payroll processing
  • Automated tax compliance
  • Centralized benefits administration

However, in a market oversaturated with myriad options, finding the best payroll software tailored to your individual needs can be a challenge. That’s why we have compiled a list of the best payroll software for manufacturing in 2025. Let's explore!

Our Picks For The Best Payroll Software For Manufacturing

Comparison Table

Software 

Best For 

Main Features 

Pricing 

Paylocity 

Recruiting new employees, shift management, and training 

Shift differentials and project management 

Comprehensive compliance 

OSHA training 

Custom pricing 

Rippling 

Unified payroll, localized IT integration 

 

Automated workflow 

Custom polices 

Stong integration with ledger tools (Sage Intacct and Xero) 

Custom pricing 

Deel 

Global payroll, international compliance 

24/7 Support 

Automated pay slip creation and delivery 

Customized onboarding and offboarding 

Starting from $29/employee/month 

 

RUN Powered By ADP 

Small manufacturing businesses and startups 

Easy to understand 

Assisted Tax Filing 

Comprehensive HR tools 

Custom pricing 

Gusto 

 

Scalability and business growth 

Cloud-based system  

Unlimited payrolls  

Flat pricing 

Starting from $49/month + $6/person/month 

Paycor 

USA-based manufactures, tailored HR needs 

Learning management 

Modular training 

Advanced timekeeping 

Labor cost tracking 

Custom pricing 

Remote 

Businesses With multi-country operations 

Built-in Employer of Record (EOR) service 

Self-service portal 

Cost calculator 

Starting from $29/employee/month 

QuickBooks Payroll 

Assisted HR, workers compensation management 

Same-day direct deposits 

Tax penalty protection 

Simplified compliance 

Starting from $35/employee/month 

TimeTrex 

Handling complex payment structures, overtime and differential pay calculations 

Attendance and time tracking integration 

Customized reporting 

Accrual tracking 

Starting from $50/month + $5/employee 

1. Paylocity

Paylocity offers comprehensive payroll and human resources (HR) solutions for businesses with specific needs. Operating primarily out of the US market, the system also provides global payroll features, including global consulting and treasury management.  

The software enables manufacturers to build a stronger workforce, through features such as headcount tracking and management. Moreover, Paylocity also offers on-demand pay, making payroll simple and smooth. The comprehensive nature of its services makes Paylocity an ideal choice for manufacturers.

Standout Features

  • Automated payroll processing
  • Real-time labor cost tracking
  • Customizable, on-demand payments

Pros

  • Customizable learning modules make Paylocity easy to integrate with existing employee infrastructure
  • Centralized HR services allow manufacturers to manage payroll from a single platform
  • Automatic job posting and management

Cons

  • Installation fee and minimum seat requirements might not be suitable for small manufacturers
  • Reports are tricky to make and choose fields for, and there’s no screen share feature

Pricing

Paylocity offers a range of plans at flexible pricing. These plans include:

  • Payroll Software
  • Human Resources Software
  • Workforce Management Software
  • Talent Management Software
  • Benefits Management Software
  • Employee Experience Platform

2. Rippling

Rippling HR offers cloud-based solutions to its customers for HR and payroll needs, all from a single platform. The software’s automated payroll processing and analysis systems make payroll fully self-sufficient, which saves manufacturers valuable time and resources. Rippling HR’s ability to integrate all financial tools into a single platform makes it one of the perfect choices for manufacturing organizations with a widespread workforce.

Standout Features

  • Fully automated global payroll system
  • Automated compliance management
  • Role-based access to features

Pros

  • Highly flexible and scalable solutions for manufacturing organizations in their growth phase
  • Global payroll capabilities make it easy for manufacturers to pay international employees
  • It offers over 500 integrations including; Zoom, Checkr, Jira and Slack allowing organizations to make full use of the platform’s capabilities

Cons

  • Complicated pricing system that lacks transparency
  • Might require time to understand the interface and integrations

Pricing

The vendor offers a wide range of Rippling HCM plans, all at custom pricing.

3. Deel

Deel offers a wide range of solutions that simplify hiring and managing employees across more than 150 countries. Its unique features, like compatibility with multiple payment methods and real-time reporting, make it a one-stop platform for manufacturers, allowing them to pay anyone, anywhere, at any given time.

Moreover, the software offers local in-house experts who simplify complicated processes with step-by-step guidance, ensuring compliance with local and international labor laws.

Standout Features

  • Multiple, well-defined payment options
  • Specialized role assignment
  • Localized benefits management

Pros

  • Customizable contracts specific to employee needs that are great for manufacturing teams
  • Easy access to global payment methods
  • Comprehensive global payroll makes international payments easy

Cons

  • Reduced flexibility for complex onboarding needs
  • Mobile version lacks features, making navigation and reporting a bit complicated

Pricing

Deel offers five detailed payment plans, starting with: 

  • Deel Global Payroll: $29/employee/month
  • Deel Contractor Management: $49/month
  • Deel PEO: $95/employee/month
  • Deel Contractor of Record: $325/month
  • Deel EOR (Employer of Record): $499/employee/month

The software also offers a Deel US Payroll plan at custom pricing.

Disclaimer: The pricing is subject to change.

4. RUN Powered By ADP

RUN is HR and payroll management software originally designed for businesses with fewer than 50 employees, but is also customizable for larger businesses, making it a great choice for small-scale manufacturers. RUN offers an automated payroll, integrated with tax filing and analysis, which eliminates the risk of payroll errors.

The software’s ability to handle complex shift patterns can be tailored for manufacturing companies that need to manage teams working on diverse schedules.

Standout Feature

  • Employee self-service portal
  • Real-time reporting
  • Cost visibility in real-time

Pros

  • RUN automatically deals with tax calculations and filings, saving time and resources for small manufacturing companies
  • Digital employee handbook, with compliance guidelines and updates
  • Easy to use and intuitive interface

Cons

  • Limited flexibility in generating custom reports
  • Timesheet customization is limited

Pricing

RUN by ADP has four plans listen on its website for businesses with 1-49 employees, these include:

  • Essential (Payroll)
  • Enhanced (Payroll)
  • Complete (Payroll and HR)
  • HR Pro (Payroll and HR)

For companies with more than 49 employees, RUN ADP offers custom pricing.

5. Gusto

Gusto provides a simplistic, cloud-based payroll solution with automated tax filing and built-in time tracking. It offers enhanced payroll capabilities, enabling manufacturing organizations to hire and manage different teams seamlessly.

Moreover, the software allows for easy payment tracking, providing much-needed simplification of payments for manufacturing organizations. Its simplification of payment options and solutions makes Gusto a great choice for small-to-medium-sized manufacturers.

Standout Features

  • Multi-currency support
  • Advanced and custom reporting
  • Gusto embedded payroll

Pros

  • Employee access to tax and benefits management offers transparency and support
  • Intuitive interface that makes payroll management easier without prior experience
  • Advanced timekeeping integrated with payroll offers a clear breakdown of wage calculations

Cons

  • Inconsistencies in benefits and time off data syncing may cause issues
  • Limitations in international payroll may cause problems for multi-national manufacturers

Pricing

There are four pricing plans available for Gusto. These include:

  • Simple: $49/month + $6/user/month
  • Plus: $80/month + $12/user/month
  • Premium: $180/month + $22/user/month
  • Contractor Only: $35/month + $6/contractor/month

Disclaimer: Pricing is subject to change.

6. Paycor

Paycor offers a comprehensive, flexible, and simplified payroll platform that makes payroll easier for manufacturers. The platform unifies employee data in a single system, integrating with regional third-party applications to meet both local and international requirements.

The system also offers manufacturing organizations tax recommendations and custom reporting, helping them adhere to global compliance and make informed decisions.

Standout Features

  • Paycor mobile wallet
  • OnDemand pay
  • Enhanced performance management

Pros

  • The Paycor wallet gives employees a one-stop, secure place to access their wages
  • Employee pay management allows access to self-service features, reducing the need for constant back and forth with HR
  • The AutoRun feature fully automates payroll

Cons

  • Delays in benefits integrations
  • Lack of key integrations and incompatibility with certain systems may cause difficulty for users looking to make the shift to Paycor

Pricing

Paycor offers flexible pricing plans depending on the varying business sizes. For businesses with under 50 employees, it offers the following plans:

  • Basic
  • Essential
  • Core
  • Complete

For businesses with 50-1000+ employees, the software offers customized pricing plans.

7. Remote

Remote is a payroll software suitable for manufacturers with globally distributed teams, as it offers international compliance management and intellectual property protection. The system provides automated employee lifecycle management and tracking worldwide, logging every payment and allowing manufacturers to manage global expenses.

Additionally, the Employer Of Record (EOR) offered by Remote eliminates the need for manufacturers to set up legal entities globally.

Standout Features

  • Automated onboarding payments
  • Intellectual property protection
  • Custom benefits packages

Pros

  • Custom employment contracts allow manufacturers to hire with ease
  • Compliance assurance offers complete security and protection for payroll
  • Remote EOR keeps track of employee data automatically without localized legal entities

Cons

  • Lack of live training and limited implementation support
  • The absence of out-of-the-box integration options may limit functionality for some manufacturers

Pricing

Remote offers six different payment plans based on services. The details of these plans are as follows:

  • Payroll: $29/employee/month
  • Contractor Management: $29/contractor/month 
  • Contractor Management Plus: $99/contractor/month 
  • Contractor Of Record: $325/contractor/month 
  • Employer Of Record: $699/employee/month 
  • Equity Advanced: $999/year 

Disclaimer: Pricing is subject to change.

8. QuickBooks Payroll

QuickBooks payroll is a cloud-based software, custom-made for manufacturers who require automated payroll and tax compliance with added HR support.

The QuickBooks Ecommerce feature can automatically bring in revenue from orders and payouts from connected online sales channels. This allows the platform to manage payroll needs autonomously, giving manufacturers a fully automated flow of capital.

Standout Features

  • Penalty tax protection
  • Workers’ compensation management
  • Same-day direct deposit

Pros

  • Large network of supported applications and partners that streamline payroll process
  • Payroll map with updated guidelines and regulations
  • Same-day direct deposit makes payments fast and easy

Cons

  • Limited to QuickBooks-specific integrations making outside integration difficult
  • Outsourced and out-of-country support makes patches and maintenance complicated

Pricing

QuickBooks offers four pricing plans, including:

  • Simple Start: $35/month
  • Essentials: $65/month
  • Plus: $99/month
  • Advanced: $235/month 

The website also offers a 30-day free trial along with each pricing plan.

Disclaimer: Pricing is subject to change.

9. TimeTrex

TimeTrex is a suitable choice for manufacturing organizations due to its ability to handle complex pay structures, including price-rate pay and shift differentials. The platform offers automated overtime calculations, along with automated accrual tracking and job-costing predictions. These features help manufacturers track labor costs and predict expenses, providing insights into productivity and profitability.

Standout Features

  • Automated accrual trackng
  • Job costing predictions
  • Advanced tracking system

Pros

  • Offers integrated payroll and HR management that lets manufacturers manage payment and capital management simultaneously
  • A robust time and resource tracking system that helps manufacturing companies optimize cooperation and coordination between teams
  • Predictive automated tax calculation helps manufacturers save time and avoid potential errors

Cons

  • Outdated platform interface that takes time to understand
  • Issues with rounding off options as TimeTrex rounds off shifts even if employees are busy or outside of the closed-off window

Pricing

TimeTrex offers three primary payment plans for 1-500 users. These plans include:

  • Professional Edition: $50/month plus $5/employee/month
  • Corporate Edition: $80/month plus $8/employee/month
  • Enterprise Edition: $100/month plus $10/employee/month

For businesses with 500+ users, the vendor offers tailored pricing plans. 

Disclaimer: Pricing is subject to change.

Features We Looked At In The Best Payroll Software For Manufacturing

To curate the best possible list of payroll software suitable for manufacturing companies, we considered the following criteria:

  • Ease-Of-Use: Regardless of features or integrations, it is important to consider the usability of the software. Our experts made their choices based on how simple and easy it is to understand the interface of payroll software specifically for manufacturing organizations.
  • Scalability: Companies and businesses grow, and that is their ultimate goal. While making their picks, our experts paid close attention to how payroll software might adapt and scale according to the needs of growing manufacturing organizations.
  • Features Offered: Our experts paid close attention to the features and functionalities offered by dozens of payroll software, picking for you the very best available on the market.
  • Reviews: One of the most important things to consider in this regard are the reviews of customers already using the software in question. Our experts scanned the internet and picked software with the best customer feedback.
  • Customer Support: Finally, our experts prioritize software that offers constant and helpful customer support. Guidance and support are imperative to the proper functioning of any good payroll software.