What Is Certified Payroll Software? 

Certified payroll software is a specialized digital tool that streamlines and automates the reporting requirements for contractors working on government-funded projects. In the United States, it is governed by the Davis-Bacon Act, which mandates that contractors and subcontractors pay their workers prevailing wages and submit weekly payroll reports (Form WH-347) to demonstrate compliance. 

Unlike general payroll software, certified payroll systems include features tailored specifically to these regulatory needs. It tracks hours worked on public projects, calculates prevailing wages and fringe benefits, and automatically generates certified payroll reports in the required format.

This type of software is commonly used by construction firms, electrical and plumbing contractors, and other service providers engaged in public works. Whether integrated into broader construction management platforms or offered as standalone tools, it plays a critical role in labor compliance and project transparency. 

Key Features Of Certified Payroll Software

When choosing certified payroll software, it’s essential to understand the core functionalities that ensure compliance and operational efficiency. Below are the primary features you should expect: 

Automated Certified Payroll Reporting 

The most crucial feature is the ability to generate certified payroll reports, especially the WH-347 form required by the U.S. Department of Labor. The software automatically fills out these forms using payroll data, reducing manual errors and saving hours of administrative time. Many tools also support state-specific forms to meet local compliance requirements. 

Prevailing Wage Rate Management 

Certified payroll software helps organizations manage complex prevailing wage requirements by allowing them to input and update wage determinations by job classification and location. The system ensures employees are paid correctly based on the work they perform and where they perform it, which is vital for compliance with federal and state laws. 

Time Tracking Integration 

Accurate time tracking is essential for certified payroll. Many platforms either include built-in time tracking or integrate with external systems to log hours worked on specific projects. This allows for precise payroll calculations and audit-ready records. 

Fringe Benefit Calculation 

Fringe benefits can be paid in cash or through benefits such as health insurance or retirement plans. Certified payroll software calculates both base wages and fringe benefits, ensuring full compliance with prevailing wage laws and accurate reporting. 

Employee Classification 

Misclassifying employees can lead to major compliance issues. Certified payroll software allows you to assign specific job roles and classifications to workers, ensuring that each employee is compensated according to their assigned duties and projects. 

Compliance Alerts And Audit Trails 

Many certified payroll tools offer compliance checks and alerts to warn users of missing data, misclassified employees, or wage discrepancies before submission. Additionally, audit trails help track changes and provide a historical record of payroll activity for internal reviews or government audits. 

Not all certified payroll tools are created equal. Before making a decision, evaluate these important factors to ensure you select software that meets your business needs. 

Compliance Support 

Does the software comply with both federal and state regulations? Make sure it supports WH-347 reporting as well as any local forms you may need. Some states have their own certified payroll requirements, and the software should accommodate them seamlessly. 

Ease Of Use 

Certified payroll can be complex, but your software shouldn’t be. A user-friendly interface with intuitive navigation helps your human resources (HR) or payroll team quickly input data, generate reports, and correct errors without the need for extensive training. 

Integration Capabilities 

Look for software that integrates with your existing accounting, HR, or time tracking systems. Seamless data transfer between tools reduces duplication and increases accuracy. 

Scalability 

If your company is growing or frequently takes on large public projects, choose a solution that can scale with you. Some platforms are better suited for small businesses, while others support large enterprises with more complex payroll structures. Therefore, choose accordingly. 

Customer Support And Training 

Reliable customer support is crucial, especially when navigating government reporting. So, check whether the provider offers live support, onboarding assistance, and a knowledge base for troubleshooting and education. 

Cost And Pricing Structure 

Understanding the total cost of ownership, including any setup fees, subscription costs, and charges for add-ons or extra users, is important. Also, consider how pricing aligns with your budget and the value delivered. 

Benefits Of Certified Payroll Software

Certified payroll software offers more than just compliance, and it can transform how government contractors manage their workforce, reporting, and administrative tasks. Here are the key benefits of using this software: 

  • Ensures Compliance: Automatically applies prevailing wage laws and generates certified reports to meet federal and state requirements 
  • Minimizes Errors: Reduces manual data entry and catches inconsistencies to prevent costly mistakes and penalties 
  • Saves Time: Automates weekly reporting and payroll calculations, freeing up time for your team 
  • Boosts Accuracy: Accurately tracks hours, wages, and classifications for precise and reliable payroll processing 
  • Enhances Transparency: Provides clear audit trails and documentation for easy verification during reviews or audits 
  • Scales With Your Business: Adapts to growing teams and multiple projects without added administrative complexity 
  • Integrates With Existing Systems: Connects seamlessly with accounting, HR, and time tracking tools for smoother workflows 
  • Strengthens Contractor Reputation: Demonstrates professionalism and reliability to government agencies through consistent, compliant reporting 

Best Certified Payroll Tools For Specific Industries

Certified payroll requirements vary across industries, necessitating specialized software solutions. Here are some of the top platforms tailored to specific sectors, ensuring compliance, efficiency, and streamlined operations. 

Construction 

Foundation Software and CEM Business Solutions are robust choices for the construction industry, where managing multiple job sites and prevailing wage rates is crucial. These platforms offer automated certified payroll reporting, integration with time-tracking tools, and compliance with Davis-Bacon Act requirements, simplifying the complexities of construction payroll management. 

Manufacturing 

Paycor and Zenefits cater to the manufacturing sector's unique needs, such as handling shift differentials and union regulations. These solutions provide comprehensive payroll processing, real-time labor cost tracking, and seamless integration with HR systems, ensuring accurate and compliant payroll operations in manufacturing environments. 

Government Contracting 

Gusto and QuickBooks Payroll are ideal for businesses engaged in government contracts, where strict adherence to certified payroll reporting is mandatory. These platforms offer user-friendly interfaces, automated WH-347 form generation, and built-in compliance checks, enabling timely and accurate submissions to government agencies. 

Healthcare 

Deel and Rippling serve the healthcare industry's specific payroll requirements, such as managing multiple pay rates and certifications. These solutions provide flexible payroll processing, compliance with healthcare labor laws, and integration with credentialing systems, ensuring efficient and compliant payroll management for healthcare organizations. 

Top Certified Payroll Software By Industry

Industry 

Top Certified Payroll Software 

Construction 

Foundation Software, CEM Business Solutions 

Manufacturing 

Paycor, Zenefits 

Government Contracting 

Gusto, QuickBooks Payroll 

Healthcare 

Deel, Rippling 

FAQs

Certified payroll software is essential for contractors, subcontractors, and businesses involved in public works or government contracts that require weekly certified payroll reporting.

Form WH-347 is the U.S. Department of Labor’s standard certified payroll report. Most certified payroll software solutions can automatically generate and populate this form using your payroll data.

These tools are designed to apply the correct prevailing wage rates, track work classifications, and manage fringe benefits to ensure full compliance with federal and state regulations.

Yes, advanced certified payroll solutions can manage multiple wage rates, locations, job roles, and projects simultaneously, ideal for construction and manufacturing firms.

Yes. Many solutions offer scalable pricing and simplified features to help small businesses remain compliant without needing a full-time payroll specialist.

Most certified payroll platforms integrate with popular accounting, HR, and time-tracking tools like QuickBooks, ADP, and Paycor to streamline data flow and reduce duplication.

Yes, especially when paired with compatible time-tracking and workforce management tools. It ensures remote workers' hours and job roles are correctly reported for compliance.

Many certified payroll tools are cloud-based, allowing you to access, manage, and submit reports securely from anywhere with an internet connection.